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23.06.15.post0.dev

Installation

  • Installation
  • Verify installation
  • Troubleshooting
  • Additional resources

User Guide

  • PYMEAcquire - Instrument control and simulation
  • PYMEImage (dh5view) - Image Data Analysis and Viewing
  • PYMEVisualise (VisGUI) - Visualising Localization Data Sets
  • Common Tasks
  • Analysing Localisation Microscopy data
  • The PYME Storage and compute cluster architecture

Development / Hacking

  • Extending PYME and writing plugins
  • Technical Details
  • API Documentation
    • PYME package
      • Subpackages
        • PYME.Acquire package
        • PYME.Analysis package
        • PYME.DSView package
        • PYME.Deconv package
        • PYME.IO package
        • PYME.LMVis package
        • PYME.cluster package
        • PYME.contrib package
        • PYME.localization package
        • PYME.misc package
        • PYME.recipes package
        • PYME.reports package
        • PYME.resources package
        • PYME.simulation package
        • PYME.tileviewer package
        • PYME.ui package
        • PYME.util package
      • Submodules
PYME
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  • Extending PYME and writing plugins »
  • PYME package »
  • PYME.IO package

PYME.IO package¶

A selection of modules for reading and writing data, negotiating paths, etc …

Key modules are:
  • PYME.IO.image : the core image class and image import functionality in PYME

  • PYME.IO.MetaDataHandler : image metadata support

  • PYME.IO.DataSources : the input adapters for different file types

Subpackages¶

  • PYME.IO.DataSources package
  • PYME.IO.FileUtils package
  • PYME.IO.countdir package

Submodules¶

  • PYME.IO.HDFSpooler module
  • PYME.IO.HTTPSpooler module
  • PYME.IO.HTTPSpooler_v2 module
  • PYME.IO.MetaDataHandler module
  • PYME.IO.PZFFormat module
  • PYME.IO.QueueSpooler module
  • PYME.IO.Spooler module
  • PYME.IO.acquisition_backends module
  • PYME.IO.buffer_helpers module
  • PYME.IO.buffers module
  • PYME.IO.clusterDuplication module
  • PYME.IO.clusterExport module
  • PYME.IO.clusterGlob module
  • PYME.IO.clusterIO module
  • PYME.IO.clusterListing module
  • PYME.IO.clusterResults module
  • PYME.IO.clusterUpload module
  • PYME.IO.cluster_directory module
  • PYME.IO.cluster_streaming module
  • PYME.IO.compatibility module
  • PYME.IO.csv_flavours module
  • PYME.IO.dataExporter module
  • PYME.IO.dataWrap module
  • PYME.IO.dcimg module
  • PYME.IO.events module
  • PYME.IO.h5File module
  • PYME.IO.h5rFile module
  • PYME.IO.image module
  • PYME.IO.load_psf module
  • PYME.IO.pyme_h5ls module
  • PYME.IO.ragged module
  • PYME.IO.rgb_image module
  • PYME.IO.setup module
  • PYME.IO.tabular module
  • PYME.IO.testClusterSpooling module
  • PYME.IO.unifiedIO module
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