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23.06.15.post0.dev

Installation

  • Installation
  • Verify installation
  • Troubleshooting
  • Additional resources

User Guide

  • PYMEAcquire - Instrument control and simulation
  • PYMEImage (dh5view) - Image Data Analysis and Viewing
  • PYMEVisualise (VisGUI) - Visualising Localization Data Sets
  • Common Tasks
  • Analysing Localisation Microscopy data
  • The PYME Storage and compute cluster architecture

Development / Hacking

  • Extending PYME and writing plugins
  • Technical Details
  • API Documentation
    • PYME package
      • Subpackages
        • PYME.Acquire package
        • PYME.Analysis package
        • PYME.DSView package
        • PYME.Deconv package
        • PYME.IO package
        • PYME.LMVis package
        • PYME.cluster package
        • PYME.contrib package
        • PYME.localization package
        • PYME.misc package
        • PYME.recipes package
        • PYME.reports package
        • PYME.resources package
        • PYME.simulation package
        • PYME.tileviewer package
        • PYME.ui package
        • PYME.util package
      • Submodules
PYME
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  • Extending PYME and writing plugins »
  • PYME package »
  • PYME.IO package »
  • PYME.IO.DataSources package

PYME.IO.DataSources package¶

Data sources are a modular method for reading data (i.e. input plugins)

Each DataSource should implement at least the following functions:

getSlice(ind) getSliceShape() getNumSlices()

For more details see BaseDataSource

PYME.IO.DataSources.getDataSourceForFilename(filename)¶

Submodules¶

  • PYME.IO.DataSources.AlignDataSource module
  • PYME.IO.DataSources.ArrayDataSource module
  • PYME.IO.DataSources.BGSDataSource module
  • PYME.IO.DataSources.BGSDataSourceX module
  • PYME.IO.DataSources.BaseDataSource module
  • PYME.IO.DataSources.BioformatsDataSource module
  • PYME.IO.DataSources.BufferedDataSource module
  • PYME.IO.DataSources.ClusterPZFDataSource module
  • PYME.IO.DataSources.ConcatenatedDataSource module
  • PYME.IO.DataSources.CropDataSource module
  • PYME.IO.DataSources.DcimgDataSource module
  • PYME.IO.DataSources.ElectronsPerSecondDataSource module
  • PYME.IO.DataSources.FlatFieldDataSource module
  • PYME.IO.DataSources.HDFDataSource module
  • PYME.IO.DataSources.HTTPDataSource module
  • PYME.IO.DataSources.ImageSeriesDataSource module
  • PYME.IO.DataSources.MultiviewDataSource module
  • PYME.IO.DataSources.OBFDataSource module
  • PYME.IO.DataSources.RandomDataSource module
  • PYME.IO.DataSources.SupertileDatasource module
  • PYME.IO.DataSources.TQDataSource module
  • PYME.IO.DataSources.TiffDataSource module
  • PYME.IO.DataSources.UnsplitDataSource module
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